（*は責任著者。下線は太田。二重下線は太田が責任著者。#はequal contribution）
36) T. Sato, S. Nakagome, C. Watanabe, K. Yamaguchi, A.
Kawaguchi, K. Koganebuchi, K. Haneji, T. Yamaguchi, T. Hanihara, K. Yamamoto,
H. Ishida, S. Mano, R. Kimura*, H. Oota*
Genome-Wide SNP Analysis Reveals Population Structure and
Demographic History
of the Ryukyu Islanders in the Southern Part of the Japanese
Archipelago
Molecular Biology and Evolution
(2014) Aug 1. doi: 10.1093 Pii: msu230. [Epub ahead of print]
35) Y. Takezawa, K. Kato,
H. Oota, T. Caulfield, A. Fujimoto, S. Honda, N. Kamatani, S.Kawamura, K.
Kawashima, R. Kimura, H. Matsumae, A. Saito, EP. Savage, N. Seguchi, K.
Shimizu, S. Terao, Y. Yamaguchi-Kabata, A. Yasukouchi, M. Yoneda, K. Tokunaga
Human genetic research,
race, ethnicity and the labeling of populations: recommendations based on an
interdisciplinary workshop in Japan
BMC Medical Ethics (2014) 15:33. Doi: 10.1186/1472-6939-15-33.
34) H. S. Said, W. Suda,
S. Nakagome, H. Chinen, K. Oshima, S. Kim, R. Kimura, A. Iraha, H. Ishida, J. Fujita,
S. Mano, H. Morita, T. Dohi, H. Oota, M. Hattori*
Dysbiosis of salivary
microbiota in inflammatory bowel disease and its association with oral
immunological biomarkers
DNA Research (2014) 21(1):15-25. doi:
10.1093/dnares/dst037.
33) Y. Matsushita, H. Oota,
B.J. Welker, M.S. Pavelka, S. Kawamura*
Color Vision Variation as
Evidenced by Hybrid L/M Opsin Genes in Wild Populations of Trichromatic
Alouatta New World Monkeys.
International Journal of Primatology
(2014) 35:71-87. doi: 10.1007/s10764-013-9705-9
32)
N. Suzuki*,
D. Nawa, H. Tateno, T. Yasuda, S. Oda, H. Mitani, T. Nishimaki, T. Katsumura, H.
Oota, T. Hanihara, A. Oga, J. Hirabayashi and K. Yamamoto
Generation
of Monoclonal antibodies against the Galß1-4Gal epitope: a key tool in studies
of species-specific glycans expressed in fish, amphibians, and birds.
Glycobiology
(2013) 23(1):91-105
Doi: 10.1093/glycob/cws129.
31)
T. Jinam, N. Nishida, M. Hirai, S. Kawamura, H. Oota, K. Umetsu, R.
Kimura, J. Ohashi, A. Tajima, T. Yamamoto, H. Tanabe, S. Mano, Y. Suto, T.
Kaname, K. Naritomi, K.Yanagi, N. Niikawa, K. Omoto*, K. Tokunaga and N.
Saitou*
The
history of human populations in the Japanese Archipelago inferred from
Genomewide SNP data with a special reference to the Ainu and the Ryukyuan
Populations.
Journal of Human Genetics
(2012) 57(12):
787-798. doi: 10.1038/jhg.2012.114. Epub 2012
Nov 8.
30) J-H. Park, T. Yamaguchi, C. Watanabe, A. Kawaguchi,
K. Haneji, M. Takeda, Y-I. Kim, Y. Tomoyasu, M. Watanabe, H. Oota, T.
Hanihara, H. Ishida, K. Maki, S-B. Park, R. Kimura*
Effects of an
Asian-specific nonsynonymous EDAR
variant on multiple dental traits.
Journal of Human Genetics (2012) 57(8): 508-514
doi: 10.1038/jhg.2012.60.
29) K. Koganebuchi#, T. Katsumura#,
S. Nakagome, H. Ishida, S. Kawamura, H. Oota*
The Asian Archival DNA Repository Consortium
Autosomal and
Y-chromosomal STR markers reveal a close relationship between Hokkaido Ainu and
Ryukyu islanders.
Anthropological Science (2012) 120(3): 199-208. DOI: 10.1537/ase.120322 [Advance
Publication] Released: June 26, 2012
28) S. Nakagome, S. Mano, L. Kozlowski, J. M. Bujnicki,
H. Shibata, Y. Fukumaki, J. R. Kidd, K. K. Kidd, S. Kawamura, H. Oota*
Crohn’s Disease Risk
Alleles on the NOD2 Locus Have Been Maintained
by Natural Selection on Standing Variation
Molecular Biology and Evolution
(2012) 29:1569-1585 doi:10.1093/molbev/mss006
27) T. Katsumura, S. Oda, K. Tsukamoto, Y. Sekiya, T.
Yamashita, M. Aso, M. Hata, M. Nonaka, S. Mano, H. Ishida, H. Mitani, S.
Kawamura, H. Oota*
A population genetic study on the
relationship between medaka fish and the spread
of wet-rice-cultivation across the Japanese
archipelago
Anthropological Science 120(1): 81-89 (2012)
DOI: 10.1537/ase.110525
26) T. Hiwatashi, A. Mikami, T. Katsumura, B. Suryobroto,
D. Perwitasari-Farajallah, S. Malaivijitnond, B. Siriaroonrat, H. Oota,
S. Goto, S. Kawamura*
Gene conversion and
purifying selection shape nucleotide variation in gibbon L/M opsin genes
BMC Evolutionary Biology
11:312 (2011)
25) S. Nakagome, Y. Takeyama, S. Mano, S. Sakisaka, T.
Matsui, S. Kawamura, H. Oota*
Population-specific
susceptibility to Crohn’s disease and ulcerative colitis; dominant and
recessive relative risks in the Japanese population
Annals
of Human Genetics 74:126-36 (2010)
24) H. Matsukusa, H.Oota*,
K. Haneji, T. Toma, S. Kawamura, H. Ishida
A Genetic Analysis of the Sakishima Islanders Reveals No
Relationship with Taiwan Aborigines but Shared Ancestry with Ainu and
Main-island Japanese
American Journal of Physical Anthropology 142:211-23 (2010)
23) T. Hiwatashi, Y. Okabe, T. Tsutsui, C. Hiramatsu, A.D.
Melin, H. Oota, C.M. Schaffner, F. Aureli, L.M. Fedigan, H. Innan, S.
Kawamura*
An explicit signature of balancing selection for color vision
variation in New World monkeys
Molecular
Biology Evolution 27: 453-64 (2010)
22) R. Kimura*, T. Yamaguchi, M. Takeda, O. Kondo, T. Toma, K.
Haneji, T. Hanihara, H. Matsukusa, S. Kawamura, K. Maki, M. Osawa, H. Ishida, H.
Oota
A common variation in EDAR is a genetic determinant of
shovel-shaped incisors
American
Journal of Human Genetics 85: 528-535 (2009)
21) T. Katsumura, S. Oda, S. Mano, N. Suguro, K.
Watanabe, H. Mitani, H. Oota*, S. Kawamura
Genetic differentiation among local populations of medaka fish (Oryzias
latipes) evaluated through grid- and deme-based sampling
Gene 443: 170-177 (2009)
20) H.R. Luo, G.S. Wu, A.J. Pakstis, L. Tong, H. Oota,
K.K. Kidd, Y.P. Zhang*
Origin
and dispersal of atypical aldehyde dehydrogenase ALDH2487Lys
Gene
435: 96-103 (2009)
19) Y. Matsumoto#, H.
Oota#, *, Y. Asaoka, H. Nishina, K. Watanabe, J.M. Bujnicki, S.
Oda, S. Kawamura, H. Mitani*
Medaka:
a promising model animal for comparative population genomics
BMC
Research Notes 2: 88-97 (2009)
18) Y. Han, S. Gu, H.
Oota, M.V. Osier, A.J. Pakstis, W.C. Speed, J.R. Kidd, K.K. Kidd*
Evidence
of positive selection on a Class I ADH locus
American
Journal of Human Genetics 80: 441-456 (2007)
17) H. Oota*, C.W.Dunn, W.C.Speed, A.J.Pakstis,
M.A.Palmatier, J.R. Kidd, K.K. Kidd*
Conservative
evolution in duplicated genes of the primate Class I ADH cluster
Gene 392: 64-76 (2007)
16) Y. Han, H. Oota, M. Osier, A. J.
Pakstis, W. C. Speed, D. Goldman, A. Odunsi, F. Okonofua, S. L. B. Kajuna, N.
J. Karoma, S. Kungulilo, E. Grigorenko, O. V. Zhukova, B. Bonne-Tamir, R-B. Lu,
J. Parnas, L. O. Schulz, J. R. Kidd, K. K. Kidd*
Considerable haplotype diversity within the
23kb encompassing the ADH7 gene
Alcoholism Clinical
Experimental Research 29:
2091-2100 (2005)
15) H. Oota#, B. Pakendorf#, G.
Weiss, W. Settheetham-Ishida, D. Tiwawech, S. Pookajorn, T. Ishida, M.
Stoneking*
Recent origin and cultural reversion of a hunter-gatherer group
PLoS Biology 3(3):e71 (2005)
14) H. Oota, A. J. Pakstis, B. Bonne-Tamir, D. Goldman,
E. Grigorenko, S. L. B. Kajuna, N. J. Karoma, S. Kungulilo, R-B. Lu, K. Odunsi,
F. Okonofua, O. V. Zhukova, J. R. Kidd, K. K. Kidd*
The evolution and population genetics of the ALDH2 locus:
random genetic drift, selection, and low levels of recombination
Annals of Human Genetics 68: 93-109 (2004)
13) H. Oota*, T. Kitano, F.
Jin, I. Yuasa, L. Wang, S. Ueda, N. Saitou, M. Stoneking
Extreme mtDNA homogeneity in continental Asian populations
American Journal of Physical
Anthropology 18: 146-153 (2002b)
12) H. Oota*, N. Saitou,
S. Ueda
A large-scale analysis of human mitochondrial DNA sequences for
ancient DNA data with special reference to the population history of East
Eurasian
Anthropological Science 110: 293-312 (2002a)
11) H. Oota, W. Settheetham-Ishida, D. Tiwawech, T. Ishida, M.
Stoneking*
Human mtDNA and Y-chromosome variation is correlated with
matrilocal versus patrilocal residence
Nature Genetics 29: 20-21
(2001b)
10) H. Oota, K. Kurosaki, S. Pookajorn, T. Ishida*, S.
Ueda
Genetic study of the Paleolithic and Neolithic Southeast Asians
Human Biology 73: 225-231 (2001a)
9) L. Wang, H. Oota, N. Saitou, F. Jin, T. Matsushita, S.
Ueda*
Genetic structure of a 2500-year-old human population in China
and its spatiotemporal changes
Molecular Biology and Evolution 17: 1396-1400 (2000)
8) H. Oota, N. Saitou, T. Matsushita, S. Ueda*
Molecular genetic analysis of remains of a 2,000-year-old human
population in China and its relevance for the origin of the modern Japanese
population
American Journal of Human Genetics 64:250-258 (1999a)
7) 太田博樹、マーク J. ハドソン / H. Oota, M. J. Hudson
先史考古学とDNA：応用と方法 / Prehistoric
archeology and the DNA revolution: applications and methods.
考古学研究 第４５巻 pp124-135 1998年9月
Quarterly of Archaeological Studies 45:124-135 (1998)
6) Y. Nakachi, T. Hayakawa, H. Oota,
K. Sumiyama, L. Wang, S. Ueda*
Nucleotide compositional constraints ongenomes generate
Alanine-, Glycine-, and Proline-rich Structure in Transcription Factors
Molecular Biology and Evolution 14(10): 147-160 (1997)
5) Y. Watanabe, T. Sakazume, K. Kurosaki, H. Oota, K. W.
Watanabe, S. Ueda*
No directionality of STR evolution at the HPRT locus in
catarrhine primates
Folia Primatologica 68: 350-353 (1997)
4) K. Kurosaki, H. Saitou, H. Oota,
Y. Watanabe, M. Kiuchi, S. Ueda*
Combined polymorphism associated with a 3-bp deletion in the
5'-flanking region of a tetrameric short tandem repeat at the CYP19
locus
Japan Journal of Legal Medicine 51: 191-195 (1997)
3) Y. Watanabe, T. Sakazume, K. Kurosaki, H. Oota, K. W.
Watanabe, S. Ueda*
Short tandem repeat polymorphisms in Japanese macaques: their
short repeat lengths and low informativeness
Mammalian Genome 7: 383-385 (1996)
2) K. Kurosaki, H. Oota, H. Saitou, M. Kiuchi, S. Ueda*
Sequence variation found in the flanking region of a trimeric
short tandem repeat at the PLA2 Locus: its considerable effect on
estimating alleles
Japan Journal of Legal Medicine 50:1-5 (1996)
1) H. Oota, N. Saitou, T.
Matsushita, S. Ueda*
A genetic study of 2,000-year-old human remains from Japan using
mitochondrial DNA sequences
American Journal of Physical
Anthropology 98:133-145 (1995)
